Stem-loop cas-MIR159b

Accession

MI0037178

Description

Camelina sativa cas-MIR159b precursor miRNA

Literature search

1 open access papers mention cas-MIR159b
(1 sentences)

Sequence

gaagagcuccuugaaguucaauggaggguuuagcaggguaaaguaaAGCUGCUAAGCUAUGGAUCCCauaagccuuaucaaaaucauugaugauaagguuuuuuuauggauuccauaucucaggagcuuucacuuaccccuuuaauggcuucacucuucUUUGGAUUGAAGGGAGCUCUUc
((((((((((((..(((((((.(((((((..(((((((..((((((((((.((.((.((((((..(((((((((((((((..(....)..)))))))))....))))))..)))))).)).)).)))))).))))..))))......)))..))))))).)))))))..))))))))))))

Structure

            ga       u       uu   ------    ua    -      G  A  C      UC      ----         aa u 
gaagagcuccuu  aguucaa ggagggu  agc      aggg  aagu aaAGCU CU AG UAUGGA  CCauaa    gccuuauca  a c
||||||||||||  ||||||| |||||||  |||      ||||  |||| |||||| || || ||||||  ||||||    |||||||||  |  
cUUCUCGAGGGA  UUAGGUU cuucuca  ucg      uccc  uuca uuucga ga uc auaccu  gguauu    uggaauagu  u a
            AG       U       cu   guaauu    ca    c      g  c  u      ua      uuuu         ag u 

Annotation confidence Not enough data

Genome context

chr14: 8626645-8626825 [+]

Mature cas-miR159b-5p

• Accession: MIMAT0045287
• Description: Camelina sativa cas-miR159b-5p mature miRNA
• Sequence: 47 - AGCUGCUAAGCUAUGGAUCCC - 67
• Evidence: experimental ; Illumina [1]

Mature cas-miR159b-3p

• Accession: MIMAT0045288
• Description: Camelina sativa cas-miR159b-3p mature miRNA
• Sequence: 160 - UUUGGAUUGAAGGGAGCUCUU - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542