miRBase entry: cas-MIR399b

Stem-loop cas-MIR399b


Accession
MI0037230
Description
Camelina sativa cas-MIR399b precursor miRNA

Literature search
1 open access papers mention cas-MIR399b
(1 sentences)

Sequence

uuacaGGGCAAGAUCACCAUUGGCAGAaaucuauuacuucauucuugcauaugcauaaauguuuguggugagcucucugccaaaggagauuugcccgguaau
((((.(((((.((((.((.((((((((..((.(((((..((((..(((....)))..))))...)))))))....)))))))).)).))))))))).)))).

Structure
-    a     A    A  A        --aa  u     -uu    cu   a 
 uuac GGGCA GAUC CC UUGGCAGA    uc auuac   cauu  ugc u
 |||| ||||| |||| || ||||||||    || |||||   ||||  |||  
 aaug cccgu uuag gg aaccgucu    ag uggug   guaa  acg a
u    g     -    a  a        cucg  -     uuu    au   u 


Annotation confidence Not enough data
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Genome context
chr5: 8222288-8222389 [-]

Database links

Mature cas-miR399b

Accession MIMAT0045353
Description Camelina sativa cas-miR399b mature miRNA
Sequence 6 - GGGCAAGAUCACCAUUGGCAGA - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542