Stem-loop cas-MIR160b

Accession

MI0037181

Description

Camelina sativa cas-MIR160b precursor miRNA

Literature search

0 open access papers mention cas-MIR160b
(0 sentences)

Sequence

agucgUGCCUGGCUCCCUGUAUGCCacaagaaaacaucgauuuaguuacaaaaucgaucacuagugGCGUACAGAGUAGUCAAGCAUGacc
.(((((((.((((((.(((((((((((.((.....((((((((.......))))))))..)).))))))))))).).))))).))))))).

Structure

a       C     - C           a  aaaac        ag 
 gucgUGC UGGCU C CUGUAUGCCac ag     aucgauuu  u
 ||||||| ||||| | ||||||||||| ||     ||||||||  u
 caGUACG ACUGA G GACAUGCGgug uc     uagcuaaa  a
c       A     U A           a  ---ac        ac 

Annotation confidence Not enough data

Genome context

chr10: 11828203-11828293 [-]

Mature cas-miR160b-5p

• Accession: MIMAT0045291
• Description: Camelina sativa cas-miR160b-5p mature miRNA
• Sequence: 6 - UGCCUGGCUCCCUGUAUGCC - 25
• Evidence: experimental ; Illumina [1]

Mature cas-miR160b-3p

• Accession: MIMAT0045292
• Description: Camelina sativa cas-miR160b-3p mature miRNA
• Sequence: 67 - GCGUACAGAGUAGUCAAGCAUG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542