Stem-loop cas-MIR172b

Accession

MI0037209

Description

Camelina sativa cas-MIR172b precursor miRNA

Literature search

0 open access papers mention cas-MIR172b
(0 sentences)

Sequence

uugugggugcagcaccauuaagauucacauggaaauugaaaaaucucuuaaaaauuaggguuuucauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaa
.(((.(((((((((.(((((((((((.((((.....((((((..((((........))))))))))......)))).))))))))))).))))))))).))).

Structure

u   g         c           a    -gaaau      au    uaa 
 ugu ggugcagca cauuaagauuc caug      ugaaaa  cucu   a
 ||| ||||||||| ||||||||||| ||||      ||||||  ||||    
 aca cUACGUCGU GUAGUUCUAAG guau      acuuuu  ggga   a
a   a         A           A    auguau      --    uua 

Annotation confidence Not enough data

Genome context

chr8: 25985951-25986053 [+]

Mature cas-miR172b

• Accession: MIMAT0045327
• Description: Camelina sativa cas-miR172b mature miRNA
• Sequence: 77 - AGAAUCUUGAUGAUGCUGCAU - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542