miRBase entry: cas-MIR5139

Stem-loop cas-MIR5139


Accession
MI0037245
Description
Camelina sativa cas-MIR5139 precursor miRNA


Sequence

gcacAAACCUGGCUCUGAUACCAcauaauacgaacucccuaggaugaaacucugauggaggcugaugacagguaaguggcgacgugaauugauggugaugaugcacagguggauugc
(((...(((((((((...(((((((...((((..((((...(((......)))...))))(((..(........)..)))..))))...)).)))))..)).)).)))))....)))

Structure
   -cAA     -  -  UGA     -  uaa    --------------------aa    cua   ug 
gca    ACCUG GC UC   UACCA ca   uacg                      cucc   gga  a
|||    ||||| || ||   ||||| ||   ||||                      ||||   |||   
cgu    uggac cg ag   guggu gu   gugc                      gagg   ucu  a
   uagg     a  u  -ua     a  uaa    agcggugaauggacaguagucg    uag   ca 


Annotation confidence Not enough data
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Genome context
chr14: 19733884-19734000 [+]

Database links

Mature cas-miR5139

Accession MIMAT0045368
Description Camelina sativa cas-miR5139 mature miRNA
Sequence 5 - AAACCUGGCUCUGAUACCA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542