Stem-loop cas-MIR167a

Accession

MI0037193

Description

Camelina sativa cas-MIR167a precursor miRNA

Literature search

1 open access papers mention cas-MIR167a
(3 sentences)

Sequence

cugaugaagcugccagcaugaucuaauuagcuuucuuuuauauccguuguuguuuuucgugacgaugguuuaagagaugagugucgauuaGAUCAUGUUCGCAGUUUCACCcg
....(((((((((.((((((((((((((.(((((((((((...((((((((.........))))))))..))))))).))))...)))))))))))))).)))))))))....

Structure

cuga         c              --a    -       uau        guu 
    ugaagcugc agcaugaucuaauu   gcuu ucuuuua   ccguuguu   u
    ||||||||| ||||||||||||||   |||| |||||||   ||||||||   u
    ACUUUGACG UUGUACUAGauuag   ugag agagaau   gguagcag   u
gcCC         C              cug    u       -uu        ugc 

Annotation confidence Not enough data

Genome context

chr1: 11226028-11226140 [+]

Mature cas-miR167a

• Accession: MIMAT0045306
• Description: Camelina sativa cas-miR167a mature miRNA
• Sequence: 91 - GAUCAUGUUCGCAGUUUCACC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542