Stem-loop cas-MIR172a

Accession

MI0037208

Description

Camelina sativa cas-MIR172a precursor miRNA

Literature search

0 open access papers mention cas-MIR172a
(0 sentences)

Sequence

gcugcuGUGGCAUCAUCAAGAUUCACAucucuguugauggacgguggugauucacucgauccccaaauuugucucugugaaaaaugAGAAUCUUGAUGAUGCUGCAUcggc
((((.(((((((((((((((((((.((((.(((((....))))).)))).(((((..(((..........)))...)))))......))))))))))))))))))).))))

Structure

    c                   -------------------------------------A    u     g 
gcug uGUGGCAUCAUCAAGAUUC                                      CAuc cuguu a
|||| |||||||||||||||||||                                      |||| |||||  
cggc ACGUCGUAGUAGUUCUAAG                                      gugg ggcag u
    U                   Aguaaaaagugucucuguuuaaaccccuagcucacuua    u     g 

Annotation confidence Not enough data

Genome context

chr16: 7477891-7478001 [-]

Mature cas-miR172a-5p

• Accession: MIMAT0045325
• Description: Camelina sativa cas-miR172a-5p mature miRNA
• Sequence: 7 - GUGGCAUCAUCAAGAUUCACA - 27
• Evidence: experimental ; Illumina [1]

Mature cas-miR172a-3p

• Accession: MIMAT0045326
• Description: Camelina sativa cas-miR172a-3p mature miRNA
• Sequence: 87 - AGAAUCUUGAUGAUGCUGCAU - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542