Stem-loop cas-MIR157a

Accession

MI0037173

Description

Camelina sativa cas-MIR157a precursor miRNA

Literature search

1 open access papers mention cas-MIR157a
(1 sentences)

Sequence

guguugacagaagauagagagcacagaugaugagauacaauucgaagcaguuucuuugcaucuuacuccuuuguGCUCUCUAGCCUUCUGUCAUCAc
(((.(((((((((.(((((((((((((.((((((((.(((...(((.....))).))).)))))).)).)))))))))))))..))))))))).)))

Structure

   u         -a             u  -      a   uuc   g 
gug ugacagaag  uagagagcacaga ga ugagau caa   gaa c
||| |||||||||  ||||||||||||| || |||||| |||   ||| a
cAC ACUGUCUUC  AUCUCUCGuguuu cu auucua guu   cuu g
   U         CG             c  c      c   --u   u 

Annotation confidence Not enough data

Genome context

chr7: 16306869-16306965 [+]

Mature cas-miR157a

• Accession: MIMAT0045282
• Description: Camelina sativa cas-miR157a mature miRNA
• Sequence: 75 - GCUCUCUAGCCUUCUGUCAUCA - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542