Stem-loop cas-MIR156c

Accession

MI0037164

Description

Camelina sativa cas-MIR156c precursor miRNA

Literature search

1 open access papers mention cas-MIR156c
(4 sentences)

Sequence

gaaacUGACAGAAGAGAGUGAGCACacaaaggcacuuugcauguccgaugcuuuugcuucucuugcguGCUCACUGCUCUAUCUGUCAGAuuc
(((.(((((((((((((((((((((.((((((((....((((.....))))...)))))...))).))))))))).)))).)))))))).)))

Structure

   a        -    -         a   ---     cuuu    g 
gaa cUGACAGA AGAG AGUGAGCAC caa   aggca    gcau u
||| |||||||| |||| ||||||||| |||   |||||    |||| c
cuu GACUGUCU UCUC UCACUCGug guu   uucgu    cgua c
   A        A    G         c   cuc     -uuu    g 

Annotation confidence Not enough data

Genome context

chr10: 4184127-4184219 [+]

Mature cas-miR156c-5p

• Accession: MIMAT0045268
• Description: Camelina sativa cas-miR156c-5p mature miRNA
• Sequence: 6 - UGACAGAAGAGAGUGAGCAC - 25
• Evidence: experimental ; Illumina [1]

Mature cas-miR156c-3p

• Accession: MIMAT0045269
• Description: Camelina sativa cas-miR156c-3p mature miRNA
• Sequence: 69 - GCUCACUGCUCUAUCUGUCAGA - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542