Stem-loop cas-MIR161

Accession

MI0037182

Description

Camelina sativa cas-MIR161 precursor miRNA

Literature search

1 open access papers mention cas-MIR161
(1 sentences)

Sequence

gaUCAAUGCAUUGAAAGUGACUAcaucggggcuuugauuuuauauguugucggucucacgauccaaucgaauaaucagccccggguuuagucaccuucacugcauuaauc
(((.((((((.((((.(((((((..((((((((..((((......(((((((......)))..)))).....))))))))))))...))))))).)))).)))))).)))

Structure

   C      U    A       -ca        uu    uuauau    --   gu 
gaU AAUGCA UGAA GUGACUA   ucggggcu  gauu      guug  ucg  c
||| |||||| |||| |||||||   ||||||||  ||||      ||||  |||   
cua uuacgu acuu cacugau   ggccccga  cuaa      uaac  agc  u
   a      c    c       uug        --    -uaagc    cu   ac 

Annotation confidence Not enough data

Genome context

chr14: 24477396-24477505 [+]

Mature cas-miR161

• Accession: MIMAT0045293
• Description: Camelina sativa cas-miR161 mature miRNA
• Sequence: 3 - UCAAUGCAUUGAAAGUGACUA - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542