Stem-loop cas-MIR398a

Accession

MI0037227

Description

Camelina sativa cas-MIR398a precursor miRNA

Sequence

caGGGUCGACAUGAGAACACAUGugcaaucaacgacuguaaugacgccacgucauuauuucauuacaucucucguuuuucaUGUGUUCUCAGGUCACCCCUg
(((((..(((.((((((((((((.......(((((..(((((((((...))))))))).............)))))...)))))))))))).)))..)))))

Structure

     UC   A            ugcaauc     -----------cu         c 
caGGG  GAC UGAGAACACAUG       aacga             guaaugacg  
|||||  ||| ||||||||||||       |||||             ||||||||| c
gUCCC  CUG ACUCUUGUGUac       uugcu             uauuacugc  
     CA   G            ----uuu     cucuacauuacuu         a 

Annotation confidence Not enough data

Genome context

chr20: 6570026-6570127 [+]

Mature cas-miR398a-5p

• Accession: MIMAT0045349
• Description: Camelina sativa cas-miR398a-5p mature miRNA
• Sequence: 3 - GGGUCGACAUGAGAACACAUG - 23
• Evidence: experimental ; Illumina [1]

Mature cas-miR398a-3p

• Accession: MIMAT0045350
• Description: Camelina sativa cas-miR398a-3p mature miRNA
• Sequence: 82 - UGUGUUCUCAGGUCACCCCU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542