Stem-loop cas-MIR160a

Accession

MI0037180

Description

Camelina sativa cas-MIR160a precursor miRNA

Literature search

0 open access papers mention cas-MIR160a
(0 sentences)

Sequence

uaUGCCUGGCUCCCUGUAUGCCauacgcuaagcccaucgaguaucgaugaccuccguggauggcguaugaggagccaugcaua
(((((.(((((((.(((((((((..(((..((..((((((...))))))..))..)))..))))))))).))))))).)))))

Structure

     C       C         ua   ua  cc      g 
uaUGC UGGCUCC UGUAUGCCa  cgc  ag  caucga  
||||| ||||||| |||||||||  |||  ||  |||||| u
auacg accgagg guaugcggu  gug  uc  guagcu  
     u       a         ag   cc  ca      a 

Annotation confidence Not enough data

Genome context

chr6: 21282450-21282532 [+]

Mature cas-miR160a

• Accession: MIMAT0045290
• Description: Camelina sativa cas-miR160a mature miRNA
• Sequence: 3 - UGCCUGGCUCCCUGUAUGCC - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542