Stem-loop cas-MIR393

Accession

MI0037218

Description

Camelina sativa cas-MIR393 precursor miRNA

Literature search

0 open access papers mention cas-MIR393
(0 sentences)

Sequence

aggaUCCAAAGGGAUCGCAUUGAUCCuaauuaaggugaauucuccccguuccaaagaaaucgcaaaaaauuugcuugguuuuggAUCAUGCUAUCUCUUUGGAUUca
.((((((((((((((.((((.(((((.(((((((((((.((((...........)))).))))..........)))))))..))))))))).)))))))))))))).

Structure

a              C    U     -u       ----------    a    cccc 
 ggaUCCAAAGGGAU GCAU GAUCC  aauuaag          guga uucu    g
 |||||||||||||| |||| |||||  |||||||          |||| ||||    u
 cUUAGGUUUCUCUA CGUA CUAgg  uugguuc          cgcu aaga    u
a              U    -     uu       guuuaaaaaa    a    aacc 

Annotation confidence Not enough data

Genome context

chr4: 25689842-25689948 [+]

Mature cas-miR393-5p

• Accession: MIMAT0045337
• Description: Camelina sativa cas-miR393-5p mature miRNA
• Sequence: 5 - UCCAAAGGGAUCGCAUUGAUCC - 26
• Evidence: experimental ; Illumina [1]

Mature cas-miR393-3p

• Accession: MIMAT0045338
• Description: Camelina sativa cas-miR393-3p mature miRNA
• Sequence: 85 - AUCAUGCUAUCUCUUUGGAUU - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542