miRBase entry: cas-MIR827a

Stem-loop cas-MIR827a


Accession
MI0037236
Description
Camelina sativa cas-MIR827a precursor miRNA

Literature search
1 open access papers mention cas-MIR827a
(1 sentences)

Sequence

ugaauguguuuguugauugacaucuaugcauauugaccauccucguguugaucgauuuguUUAGAUGACCAUCAACAAACGcuuucg
.(((.((((((((((((.(.((((((.(((.(((((.((.........)).))))).))).)))))).).)))))))))))).))).

Structure
u   u            u a      u   u     c  ucc 
 gaa guguuuguugau g caucua gca auuga ca   u
 ||| |||||||||||| | |||||| ||| ||||| ||   c
 cuu cGCAAACAACUA C GUAGAU ugu uagcu gu   g
g   u            C A      U   u     a  ugu 


Annotation confidence Not enough data
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Genome context
chr16: 2185297-2185383 [+]

Database links

Mature cas-miR827a

Accession MIMAT0045359
Description Camelina sativa cas-miR827a mature miRNA
Sequence 61 - UUAGAUGACCAUCAACAAACG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542