Stem-loop cas-MIR171c

Accession

MI0037207

Description

Camelina sativa cas-MIR171c precursor miRNA

Sequence

aauacgAGAUAUUGGUGCGGUUCAAUCagaaaacuguacucucuuuuuuuuuccagagaucggcuuguuugaUUGAGCCGUGCCAAUAUCACGuguu
((((((.(((((((((((((((((((((((.(((((...(((((..........))))).))).)).))))))))))))))))))))))).))))))

Structure

      A                       a  -   uac     uuuu 
aauacg GAUAUUGGUGCGGUUCAAUCaga aa cug   ucucu    u
|||||| ||||||||||||||||||||||| || |||   |||||     
uuguGC CUAUAACCGUGCCGAGUUaguuu uu ggc   agaga    u
      A                       g  c   --u     ccuu 

Annotation confidence Not enough data

Genome context

chr16: 27650814-27650910 [-]

Mature cas-miR171c-5p

• Accession: MIMAT0045323
• Description: Camelina sativa cas-miR171c-5p mature miRNA
• Sequence: 7 - AGAUAUUGGUGCGGUUCAAUC - 27
• Evidence: experimental ; Illumina [1]

Mature cas-miR171c-3p

• Accession: MIMAT0045324
• Description: Camelina sativa cas-miR171c-3p mature miRNA
• Sequence: 73 - UUGAGCCGUGCCAAUAUCACG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542