Stem-loop cas-MIR157b

Accession

MI0037174

Description

Camelina sativa cas-MIR157b precursor miRNA

Literature search

1 open access papers mention cas-MIR157b
(1 sentences)

Sequence

gguuguugacagaagauagagagcacuaaggaugacaugcaaguacauauacauauauaucaucacaccgcauguggauguuaaaauauguauaacaaauucaagaaagaaagagagaaagagagggagagggagagaaagagccugcaucuuaucuuuuguGCUCUCUAUACUUCUGUCACCacc
(((.((.(((((((((((((((((((.((((((((.((((.......(((((((((....((((.(((.....))))))).....))))))))).....(((......)))..................(((...........))))))).)))))))).))))))))))).)))))))))).)))

Structure

   u  u        -           u        c    ---------------------------------------------aaguaca         -auau    a   c 
ggu gu gacagaag auagagagcac aaggauga augc                                                    uauacauau     cauc cac g
||| || |||||||| ||||||||||| |||||||| ||||                                                    |||||||||     |||| ||| c
cca CA CUGUCUUC UAUCUCUCGug uuucuauu uacg                                                    auauguaua     guag gug a
   C  -        A           u        c    uccgagaaagagagggagagggagagaaagagagaaagaaagaacuuaaaca         aaauu    -   u 

Annotation confidence Not enough data

Genome context

chr15: 9404996-9405181 [-]

Mature cas-miR157b

• Accession: MIMAT0045283
• Description: Camelina sativa cas-miR157b mature miRNA
• Sequence: 163 - GCUCUCUAUACUUCUGUCACC - 183
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542