Stem-loop cas-MIR172c

Accession

MI0037210

Description

Camelina sativa cas-MIR172c precursor miRNA

Literature search

0 open access papers mention cas-MIR172c
(0 sentences)

Sequence

guuGGAGCAUCAUCAAGAUUCACAaaucaucaaguauauguacauucguauguacuaugauaagauuuuugauguauguaugagaaucuugaugaugcugcagc
((((.(((((((((((((((((((...(((((((((((.((((((....))))))))))........)))))))..)))....)))))))))))))))).))))

Structure

    G                ----   aau       --------    u      u 
guuG AGCAUCAUCAAGAUUC    ACA   caucaag        uaua guacau c
|||| ||||||||||||||||    |||   |||||||        |||| ||||||  
cgac ucguaguaguucuaag    ugu   guaguuu        guau caugua g
    g                agua   -au       uuagaaua    -      u 

Annotation confidence Not enough data

Genome context

chr19: 5163464-5163567 [-]

Mature cas-miR172c

• Accession: MIMAT0045328
• Description: Camelina sativa cas-miR172c mature miRNA
• Sequence: 4 - GGAGCAUCAUCAAGAUUCACA - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542