Stem-loop cas-MIR166c

Accession

MI0037189

Description

Camelina sativa cas-MIR166c precursor miRNA

Literature search

1 open access papers mention cas-MIR166c
(4 sentences)

Sequence

uugaggGGAAUGUUGUCUGGCACGAGGcccuuaacucagaucuacuacacuugauuauauauuuauaaguacucucuucuuuauuuaauuagucuacacguauauguaugaaugaucuaacgguuaaugacgUCGGACCAGGCUUCAUUCCCCUcaa
.(((((((((((..((((((..(((.(.(.((((((.(((((............((((((((.(((..(((..((...............))..)))..))).))))))))..)))))...)))))).).).)))..))))))..))))))))))).

Structure

u           UU      CA   G c c      --c     uacuacacuuga        u   aa   cu  cuucuu 
 ugaggGGAAUG  GUCUGG  CGA G c uuaacu   agauc            uuauauau uau  gua  cu      u
 |||||||||||  ||||||  ||| | | ||||||   |||||            |||||||| |||  |||  ||      a
 acUCCCCUUAC  CGGACC  GCU c g aauugg   ucuag            aguaugua aug  cau  ga      u
a           UU      AG   g a u      caa     ----------ua        u   ca   cu  uuaauu 

Annotation confidence Not enough data

Genome context

chr11: 29041816-29041972 [-]

Mature cas-miR166c-5p

• Accession: MIMAT0045300
• Description: Camelina sativa cas-miR166c-5p mature miRNA
• Sequence: 7 - GGAAUGUUGUCUGGCACGAGG - 27
• Evidence: experimental ; Illumina [1]

Mature cas-miR166c-3p

• Accession: MIMAT0045301
• Description: Camelina sativa cas-miR166c-3p mature miRNA
• Sequence: 133 - UCGGACCAGGCUUCAUUCCCCU - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542