Stem-loop cas-MIR169c

Accession

MI0037199

Description

Camelina sativa cas-MIR169c precursor miRNA

Literature search

1 open access papers mention cas-MIR169c
(1 sentences)

Sequence

ggUAGCCAAGGAUGACUUGCCUGcaucuucauaccaauguaaauguauaucaaggaugacaaaguuugauuuuuuacauugcguuugcauacuguuaggcaguuuccuuggcuauu
.(((((((((((.((((.(((((((....((.(((((((((((.....((((((..........))))))..))))))))).)).)).....)).)))))))))))))))))))).

Structure

g           U    U     -  -ucuu  u  -         uguau      gaug 
 gUAGCCAAGGA GACU GCCUG ca     ca ac caauguaaa     aucaag    a
 ||||||||||| |||| ||||| ||     || || |||||||||     ||||||     
 uaucgguuccu uuga cggau gu     gu ug guuacauuu     uaguuu    c
u           -    -     u  cauac  u  c         ---uu      gaaa 

Annotation confidence Not enough data

Genome context

chr3: 8799479-8799594 [+]

Mature cas-miR169c

• Accession: MIMAT0045312
• Description: Camelina sativa cas-miR169c mature miRNA
• Sequence: 3 - UAGCCAAGGAUGACUUGCCUG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542