Stem-loop cas-MIR828

Accession

MI0037237

Description

Camelina sativa cas-MIR828 precursor miRNA

Literature search

1 open access papers mention cas-MIR828
(1 sentences)

Sequence

caugagaugcucauuugagcaagcaauguuugcaaguggaacuauuaaauaguaucauguaugacuuuucuuuuuuuuugcuuuuguugauaaaaucuccuuccaguuccuaacguuUCUUGCUUAAAUGAGUAUUCCaug
((((.((((((((((((((((((.((((((.(.((.(((((.((((((..((((........((....))........))))....))))))........))))).)).).)))))).)))))))))))))))))).))))

Structure

    a                  c      u c  g     -------c      --au    ucauguau  c 
caug gaugcucauuugagcaag aauguu g aa uggaa        uauuaa    agua        ga u
|||| |||||||||||||||||| |||||| | || |||||        ||||||    ||||        ||  
guaC UUAUGAGUAAAUUCGUUC uugcaa c uu accuu        auaguu    ucgu        cu u
    C                  U      u c  g     ccucuaaa      guuu    uuuuuuuu  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cas-miR828

• Accession: MIMAT0045360
• Description: Camelina sativa cas-miR828 mature miRNA
• Sequence: 118 - UCUUGCUUAAAUGAGUAUUCC - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542