Stem-loop cas-MIR165a

Accession

MI0037185

Description

Camelina sativa cas-MIR165a precursor miRNA

Literature search

1 open access papers mention cas-MIR165a
(3 sentences)

Sequence

guugaggggaauguugucuggaucgaggauauuauauauacagacacacguauaagauauauacauguauguugauacaagugaucauauauauauauauauguauagagaguauccUCGGACCAGGCUUCAUCCCCCccaac
((((.((((.(((..((((((.(((((((((((...((((((.......(((((.(((...(((.(((((....))))).)))))).))))).........))))))...))))))))))).))))))..))).)))).))))

Structure

    a    a   uu      a           aua      --gacacac     a   aua   a     g 
guug gggg aug  gucugg ucgaggauauu   uauaca         guaua gau   uac uguau u
|||| |||| |||  |||||| |||||||||||   ||||||         ||||| |||   ||| |||||  
caac CCCC UAC  CGGACC GGCUccuauga   auaugu         uauau cua   gug acaua u
    c    C   UU      A           gag      auauauaua     a   ---   a     g 

Annotation confidence Not enough data

Genome context

chr14: 421550-421692 [+]

Mature cas-miR165a

• Accession: MIMAT0045296
• Description: Camelina sativa cas-miR165a mature miRNA
• Sequence: 118 - UCGGACCAGGCUUCAUCCCCC - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542