Stem-loop cas-MIR395c

Accession

MI0037222

Description

Camelina sativa cas-MIR395c precursor miRNA

Literature search

1 open access papers mention cas-MIR395c
(1 sentences)

Sequence

cccaugaGUUCCCUUUAACGCUUCAUUGuuguuaauacaccaaaaacacauuuguuuuauuaaaauguuuguucgguuuguauauaacaacaCUGAAGUGUUUGGGGGGACUCuuggu
.(((.((((((((((.(((((((((.(((((((((((((((.((...((((((.........))))))...)).)))..)))).)))))))).))))))))).)))))))))).))).

Structure

c   u          U         U        -    --   a  aac      guu 
 cca gaGUUCCCUU AACGCUUCA UGuuguua auac  acc aa   acauuu   u
 ||| |||||||||| ||||||||| |||||||| ||||  ||| ||   ||||||   u
 ggu CUCAGGGGGG UUGUGAAGU acaacaau uaug  ugg uu   uguaaa   a
u   u          U         C        a    uu   c  guu      auu 

Annotation confidence Not enough data

Genome context

chr17: 12172713-12172830 [-]

Mature cas-miR395c-5p

• Accession: MIMAT0045342
• Description: Camelina sativa cas-miR395c-5p mature miRNA
• Sequence: 8 - GUUCCCUUUAACGCUUCAUUG - 28
• Evidence: experimental ; Illumina [1]

Mature cas-miR395c-3p

• Accession: MIMAT0045343
• Description: Camelina sativa cas-miR395c-3p mature miRNA
• Sequence: 93 - CUGAAGUGUUUGGGGGGACUC - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542