Stem-loop cas-MIR167c

Accession

MI0037195

Description

Camelina sativa cas-MIR167c precursor miRNA

Literature search

1 open access papers mention cas-MIR167c
(3 sentences)

Sequence

ccaguagcaguuaagcugccagcaugaucuugucuuccucucuuaaguuucacacauauauauauauauauauauauaaucaaguaaauuaggauuuucuauauuucuuguucuuauauaaagauuauaugaucguagcuuagagagagagagacuAGGUCAUGCUGGUAGCUUCACcugcuaauga
.((.((((((..((((((((((((((((((.(((((.((((((((((((.(.....(((((((((....)))))))))..((((.((((((((....)))).))))))))...((((((((...))))))))..).))))).))))))).))))).))))))))))))))))))...)))))).)).

Structure

c  g      -uu                  u     c       -     u acacauauauauauauauauauauauaau    u    -    a 
 ca uagcag   aagcugccagcaugaucu gucuu cucucuu aaguu c                             caag aaau uagg u
 || ||||||   |||||||||||||||||| ||||| ||||||| ||||| |                             |||| |||| ||||  
 gu aucguc   UUCGAUGGUCGUACUGGA cagag gagagag uucga g                             guuc uuua aucu u
a  a      CAC                  u     a       a     u -----cuaguauauuagaaauauauucuu    -    u    u 

Annotation confidence Not enough data

Genome context

chr19: 1702731-1702917 [-]

Mature cas-miR167c

• Accession: MIMAT0045308
• Description: Camelina sativa cas-miR167c mature miRNA
• Sequence: 157 - AGGUCAUGCUGGUAGCUUCAC - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542