Stem-loop cas-MIR858

Accession

MI0037240

Description

Camelina sativa cas-MIR858 precursor miRNA

Literature search

1 open access papers mention cas-MIR858
(1 sentences)

Sequence

gagcaaaguuguugaauucagugcaaacacuugucaaaggagcagucccgaucugguuccaucuucuUUUCGUUGUCUGUUCGACCUUggcuu
((((.(((..((((((..(((.((((............(((((((.......)).)))))............)))))))))))))))).))))

Structure

    a   uu      uu   u    acacuugucaaa     -  uc 
gagc aag  guugaa  cag gcaa            ggagc ag  c
|||| |||  ||||||  ||| ||||            ||||| ||  c
uucg UUC  CAGCUU  GUC UGUU            ccuug uc  g
    g   --      --   -    GCUUUucuucua     g  ua 

Annotation confidence Not enough data

Genome context

chr7: 20989573-20989665 [+]

Mature cas-miR858

• Accession: MIMAT0045363
• Description: Camelina sativa cas-miR858 mature miRNA
• Sequence: 68 - UUUCGUUGUCUGUUCGACCUU - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542