Stem-loop cas-MIR169a

Accession

MI0037197

Description

Camelina sativa cas-MIR169a precursor miRNA

Literature search

1 open access papers mention cas-MIR169a
(1 sentences)

Sequence

gugCAGCCAAGGAUGACUUGCCGAuuuaagugaucuuucuuuauacucuauuaagacauuuuuaguaucaaaauucuuugguucuugaagaagucaggaagaaauuauaauugauauauaguguuccuuauuauauacaauuauaaccaaaaagaaaaaaaguaacaugaucggcaaguuguccuuggcuacac
(((.((((((((((((((((((((((...(((.(((((((..............(((.(((((((.((((((....))))))..))))))).))))))))))..(((((((((.(((((((((.....))))))))))))))))))...................))))))))))))))))))))))))).)))

Structure

   C                      uaa   aucuuucuuuauacucuauuaagacauuuuuaguaucaaaauucuuugguucuugaagaagucaggaagaaa         a         u 
gug AGCCAAGGAUGACUUGCCGAuu   gug                                                                        uuauaauug uauauagug u
||| ||||||||||||||||||||||   |||                                                                        ||||||||| ||||||||| c
cac ucgguuccuguugaacggcuag   uac                                                                        aauauuaac auauauuau c
   a                      ---   -----------------------------------------------------aaugaaaaaaagaaaaacc         -         u 

Annotation confidence Not enough data

Genome context

chr19: 6155360-6155553 [-]

Mature cas-miR169a

• Accession: MIMAT0045310
• Description: Camelina sativa cas-miR169a mature miRNA
• Sequence: 4 - CAGCCAAGGAUGACUUGCCGA - 24
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542