Stem-loop cas-MIR172d

Accession

MI0037211

Description

Camelina sativa cas-MIR172d precursor miRNA

Literature search

0 open access papers mention cas-MIR172d
(0 sentences)

Sequence

uuGCAACAUCUUCAAGAUUCAGAaaucauuuucuuuuauggguucuccuuuggagccuauauuauuugguuugagaaucuugaugaugcugcag
.((((.((((.(((((((((..((((((..(.....((((((((((.....))))))))))..)..))))))..))))))))).)))).)))).

Structure

u    A    U         AG      uu ucuuu          c 
 uGCA CAUC UCAAGAUUC  Aaauca  u     uauggguucu c
 |||| |||| |||||||||  ||||||  |     |||||||||| u
 acgu guag aguucuaag  uuuggu  a     auauccgagg u
g    c    u         ag      uu ---uu          u 

Annotation confidence Not enough data

Genome context

chr4: 20385529-20385622 [+]

Mature cas-miR172d

• Accession: MIMAT0045329
• Description: Camelina sativa cas-miR172d mature miRNA
• Sequence: 3 - GCAACAUCUUCAAGAUUCAGA - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542