Stem-loop cas-MIR169g

Accession

MI0037203

Description

Camelina sativa cas-MIR169g precursor miRNA

Literature search

1 open access papers mention cas-MIR169g
(1 sentences)

Sequence

aaUAGCCAAGGAUGACUUGCCUGaucuuuuucaccuccaugauucaauuugaaguucauggguuuuggauuauuaugcauuuaaaagguauaauaauuugaaacuccucugaaucuugcggguuagguuucaGGCAGUCUCCUUGGCUAUU
((((((((((((.((((.((((((....(((.((((.((.((((((...(((...))).(((((((((((((((((((.........)))))))))))))))))))...)))))).)).)))).)))..))))))))))))))))))))))

Structure

            U    U      ucuu   c    c  u      auuugaaguucau                   auu 
aaUAGCCAAGGA GACU GCCUGa    uuu accu ca gauuca             ggguuuuggauuauuaugc   u
|||||||||||| |||| ||||||    ||| |||| || ||||||             |||||||||||||||||||   a
UUAUCGGUUCCU CUGA CGGacu    gga uggg gu cuaagu             cucaaaguuuaauaauaug   a
            -    -      --uu   u    c  u      ----------cuc                   gaa 

Annotation confidence Not enough data

Genome context

chr9: 4684239-4684389 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cas-MIR169g

Mature cas-miR169g-5p

• Accession: MIMAT0045317
• Description: Camelina sativa cas-miR169g-5p mature miRNA
• Sequence: 3 - UAGCCAAGGAUGACUUGCCUG - 23
• Evidence: experimental ; Illumina [1]

Mature cas-miR169g-3p

• Accession: MIMAT0045318
• Description: Camelina sativa cas-miR169g-3p mature miRNA
• Sequence: 133 - GGCAGUCUCCUUGGCUAUU - 151
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542