Stem-loop cas-MIR169e

Accession

MI0037201

Description

Camelina sativa cas-MIR169e precursor miRNA

Literature search

1 open access papers mention cas-MIR169e
(1 sentences)

Sequence

ggUAGCCAAGGAUGACUUGCCUGuuucuuugaguaaaaugguuaugucauauuugacaagugacuauaaguuauaacaaguaaugaccauuucgcucaucaaaagauaucaGGCAGUCUCCUUGGCUAUCc
((((((((((((.((((.(((((..(((((((((.((((((((((((((....))))..((((((...))))))........)))))))))).)))))....))))...))))))))))))))))))))).

Structure

-            U    U     -uu    ----     a          gucauauuugacaa      a 
 ggUAGCCAAGGA GACU GCCUG   ucuu    ugagu aaaugguuau              gugacu  
 |||||||||||| |||| |||||   ||||    ||||| ||||||||||              |||||| u
 CUAUCGGUUCCU CUGA CGGac   agaa    acucg uuuaccagua              uauuga  
c            -    -     uau    aacu     c          ------augaacaa      a 

Annotation confidence Not enough data

Genome context

chr9: 4687235-4687365 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cas-MIR169e

Mature cas-miR169e-5p

• Accession: MIMAT0045314
• Description: Camelina sativa cas-miR169e-5p mature miRNA
• Sequence: 3 - UAGCCAAGGAUGACUUGCCUG - 23
• Evidence: experimental ; Illumina [1]

Mature cas-miR169e-3p

• Accession: MIMAT0045315
• Description: Camelina sativa cas-miR169e-3p mature miRNA
• Sequence: 112 - GGCAGUCUCCUUGGCUAUC - 130
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542