Stem-loop cas-MIR162a

Accession

MI0037183

Description

Camelina sativa cas-MIR162a precursor miRNA

Sequence

cacuggaggcagcgguucaucgaucucuuccuggggacacaaaaaaaaaagaaaaauaaaauggaaaagcaugaauagaUCGAUAAACCUCUGCAUCCAgug
(((((((.((((.((((.((((((((.(((.((......((....................))......)).))).)))))))).)))).)))).)))))))

Structure

       g    c    c        c   c  gggaca  aaaaaaaaa 
cacugga gcag gguu aucgaucu uuc ug      ca         g
||||||| |||| |||| |||||||| ||| ||      ||          
gugACCU CGUC CCAA UAGCUaga aag ac      gu         a
       A    U    A        u   u  gaaaag  aaaauaaaa 

Annotation confidence Not enough data

Genome context

chr8: 24063778-24063879 [+]

Mature cas-miR162a

• Accession: MIMAT0045294
• Description: Camelina sativa cas-miR162a mature miRNA
• Sequence: 80 - UCGAUAAACCUCUGCAUCCA - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542