Stem-loop cas-MIR166e

Accession

MI0037191

Description

Camelina sativa cas-MIR166e precursor miRNA

Literature search

1 open access papers mention cas-MIR166e
(4 sentences)

Sequence

ugagggggauguugucuggcucgaggacucuagcucgcucuauucauguuuugggucuuuuucgaucuaauauuugaaccuccagauuuucagaucugauuuaggguuuuagcgucgUCGGACCAGGCUUCAUUCCCUcca
((.((((((((..((((((.((((.(((.((((...((((((((((.((.(((((((......))))))).)).))))....((((((....))))))...)))))).)))).))).)))).))))))..)))))))).))

Structure

  a        uu      c    g   u    cuc      -----------------------    u  u       uu 
ug gggggaug  gucugg ucga gac cuag   gcucua                       uuca gu uuggguc  u
|| ||||||||  |||||| |||| ||| ||||   ||||||                       |||| || |||||||   
ac UCCCUUAC  CGGACC GGCU cug gauu   ugggau                       aagu ua aaucuag  u
  c        UU      A    g   c    --u      uuagucuagacuuuuagaccucc    u  u       cu 

Annotation confidence Not enough data

Genome context

chr6: 25720187-25720327 [+]

Mature cas-miR166e

• Accession: MIMAT0045303
• Description: Camelina sativa cas-miR166e mature miRNA
• Sequence: 118 - UCGGACCAGGCUUCAUUCCCU - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542