Stem-loop cas-MIR394

Accession

MI0037219

Description

Camelina sativa cas-MIR394 precursor miRNA

Literature search

1 open access papers mention cas-MIR394
(2 sentences)

Sequence

ucUUUGGCAUUCUGUCCACCUCCuucuauacauaucugcauguguguggaagaaggagguggguauacugccaauaga
(((((((((...(((((((((((((((.(((((((......)))))))..)))))))))))))))...)))))).)))

Structure

   -      UUC               -a       cu 
ucU UUGGCA   UGUCCACCUCCuucu  uacauau  g
||| ||||||   |||||||||||||||  |||||||   
aga aaccgu   auggguggaggaaga  gugugug  c
   u      cau               ag       ua 

Annotation confidence Not enough data

Genome context

chr17: 9433715-9433792 [+]

Mature cas-miR394

• Accession: MIMAT0045339
• Description: Camelina sativa cas-miR394 mature miRNA
• Sequence: 3 - UUUGGCAUUCUGUCCACCUCC - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542