Stem-loop cas-MIR169f

Accession

MI0037202

Description

Camelina sativa cas-MIR169f precursor miRNA

Literature search

1 open access papers mention cas-MIR169f
(1 sentences)

Sequence

ggaauugagccaaggaugacuugccgguuuuaaacacaaccgguuuaugaccauuuauuuggucucauucacaaucuguugauuugugucugGCAAGUUGACCUUGGCUCUGCuucg
(((...(((((((((..((((((((((...(((((.......))))).(((((......))))).....(((((((....)).))))).))))))))))..)))))))))...))).

Structure

-   auu         au          uuuuaaacacaaccgguuuaugaccauuuauuuggucucauu     -  u 
 gga   gagccaagg  gacuugccgg                                          cacaa uc g
 |||   |||||||||  ||||||||||                                          ||||| ||  
 cuu   CUCGGUUCC  UUGAACGguc                                          guguu ag u
g   CGU         AG          -----------------------------------------u     u  u 

Annotation confidence Not enough data

Genome context

chr15: 6647086-6647202 [-]

Mature cas-miR169f

• Accession: MIMAT0045316
• Description: Camelina sativa cas-miR169f mature miRNA
• Sequence: 93 - GCAAGUUGACCUUGGCUCUGC - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542