Stem-loop cas-MIR398b

Accession

MI0037228

Description

Camelina sativa cas-MIR398b precursor miRNA

Sequence

ucaaaggcaugccaugagaacacagauccucugguuucuuuauauuccuauuugaaaccauugaguuUGUGUUCUCAGGUCACCCCUuuga
(((((((..((((.(((((((((((((.(..(((((((...............)))))))..).))))))))))))))).))..)))))))

Structure

       ca  -  a             c uc       uuuaua 
ucaaagg  ug cc ugagaacacagau c  ugguuuc      u
|||||||  || || ||||||||||||| |  |||||||      u
aguuUCC  AC GG ACUCUUGUGUuug g  accaaag      c
       CC  U  -             a uu       uuuauc 

Annotation confidence Not enough data

Genome context

chr4: 3209179-3209269 [+]

Mature cas-miR398b

• Accession: MIMAT0045351
• Description: Camelina sativa cas-miR398b mature miRNA
• Sequence: 68 - UGUGUUCUCAGGUCACCCCU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542