Stem-loop cas-MIR156k

Accession

MI0037172

Description

Camelina sativa cas-MIR156k precursor miRNA

Literature search

1 open access papers mention cas-MIR156k
(4 sentences)

Sequence

uugauggUGACAGAAGAGAGUGAGCACaaauggugacuuucuugcauaagguuucaugcuggaagcuaugugUGCUUACUCUCUAUCUGUCACCucuuucu
..((.(((((((((((((((((((((((.(((((....((((.((((........)))).))))))))).)))))))))))))).))))))))))).....

Structure

---uu  u         -              a     gacu    u    aag 
     ga ggUGACAGA AGAGAGUGAGCACa auggu    uucu gcau   g
     || ||||||||| |||||||||||||| |||||    |||| ||||    
     cu CCACUGUCU UCUCUCAUUCGUgu uaucg    aagg cgua   u
ucuuu  -         A              g     ----    u    cuu 

Annotation confidence Not enough data

Genome context

chr13: 13364811-13364911 [+]

Mature cas-miR156k-5p

• Accession: MIMAT0045280
• Description: Camelina sativa cas-miR156k-5p mature miRNA
• Sequence: 8 - UGACAGAAGAGAGUGAGCAC - 27
• Evidence: experimental ; Illumina [1]

Mature cas-miR156k-3p

• Accession: MIMAT0045281
• Description: Camelina sativa cas-miR156k-3p mature miRNA
• Sequence: 73 - UGCUUACUCUCUAUCUGUCACC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542