Stem-loop cas-MIR319b

Accession

MI0037214

Description

Camelina sativa cas-MIR319b precursor miRNA

Literature search

1 open access papers mention cas-MIR319b
(3 sentences)

Sequence

agAGAGCUUUCUUCGGUCCACUCauggaguaauaugugagauuuaauugacucucgacucauucauccaaauaccauaugaaugaauaugcccgcauaugguaaaugaauuaaugaugcgagagacaaauugagucuucacuucucuaugcuuggacugaagggagcucccu
((.(((((((((((((((((..(((((((......(((((((((((((..((((((..(((((.((.((..(((((((((...(......)...)))))))))..)).)).)))))..))))))...))))))))).))))..)))))))..))))))))))))))))).))

Structure

  A                 CU       uaauau    -         -ga      ac     c  c  aa         aau aa 
ag GAGCUUUCUUCGGUCCA  Cauggag      guga gauuuaauu   cucucg  ucauu au ca  uaccauaug   g  u
|| |||||||||||||||||  |||||||      |||| |||||||||   ||||||  ||||| || ||  |||||||||   |   
uc cucgagggaagucaggu  guaucuc      cacu cugaguuaa   gagagc  aguaa ua gu  augguauac   c  a
  c                 uc       ----uu    u         aca      gu     u  a  aa         gcc gu 

Annotation confidence Not enough data

Genome context

chr11: 28719157-28719328 [-]

Mature cas-miR319b

• Accession: MIMAT0045332
• Description: Camelina sativa cas-miR319b mature miRNA
• Sequence: 3 - AGAGCUUUCUUCGGUCCACUC - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542