Stem-loop cas-MIR156a

Accession

MI0037162

Description

Camelina sativa cas-MIR156a precursor miRNA

Literature search

1 open access papers mention cas-MIR156a
(4 sentences)

Sequence

gaaacUGACAGAAGAGAGUGAGCACucaaaggcaauuugcauaucauugcauuugcuucucuugcgugcucacugcucuuucugucagauucc
(((.(((((((((((((((((((((.(((((((((..((((......)))).))))))...))).))))))))).))).))))))))).))).

Structure

-   a         -   -         u   ---      uu    ua 
 gaa cUGACAGAA GAG AGUGAGCAC caa   aggcaa  ugca  u
 ||| ||||||||| ||| ||||||||| |||   ||||||  ||||   
 cuu gacugucuu cuc ucacucgug guu   uucguu  acgu  c
c   a         u   g         c   cuc      -u    ua 

Annotation confidence Not enough data

Genome context

chr16: 24048680-24048772 [-]

Mature cas-miR156a

• Accession: MIMAT0045265
• Description: Camelina sativa cas-miR156a mature miRNA
• Sequence: 6 - UGACAGAAGAGAGUGAGCAC - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542