miRBase entry: cas-MIR156j

Stem-loop cas-MIR156j


Accession
MI0037171
Description
Camelina sativa cas-MIR156j precursor miRNA

Literature search
1 open access papers mention cas-MIR156j
(4 sentences)

Sequence

uUGACAGAAGAGAGAGAGCACagcuugagucugugcuauuguuguucaucaucucuggacauguuau
.(((((....((((((((.(((((...(((....)))...))))).).)).))))).....))))).

Structure
u     -GAAG     -  - C     uug   c 
 UGACA     AGAGA GA G ACagc   agu u
 |||||     ||||| || | |||||   |||  
 auugu     ucucu cu c uguug   ucg g
u     acagg     a  a u     uua   u 


Annotation confidence Not enough data
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Genome context
chr6: 18107442-18107508 [+]

Database links

Mature cas-miR156j

Accession MIMAT0045279
Description Camelina sativa cas-miR156j mature miRNA
Sequence 2 - UGACAGAAGAGAGAGAGCAC - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25826400
    Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
    Poudel S, Aryal N, Lu C
    PLoS One (2015) 10:e0121542