Stem-loop cas-MIR390b

Accession

MI0037217

Description

Camelina sativa cas-MIR390b precursor miRNA

Literature search

1 open access papers mention cas-MIR390b
(1 sentences)

Sequence

agcuguaAAGCUCAGGAGGGAUAGCGCCaugacucaacaacauuuguauguuugcauauacauauauauguauuguuguuggcgcuauccauccugaguuccauagcu
((((((..(((((((((.(((((((((((.....(((((((((.(((((((........))))))).))))..))))).))))))))))).)))))))))..))))))

Structure

      aA         G           ugacu     --    u       uug 
agcugu  AGCUCAGGA GGAUAGCGCCa     caaca  acau uguaugu   c
||||||  ||||||||| |||||||||||     |||||  |||| |||||||    
ucgaua  uugaguccu ccuaucgcggu     guugu  ugua auauaca   a
      cc         a           ----u     ua    u       uau 

Annotation confidence Not enough data

Genome context

chr2: 24169258-24169365 [+]

Mature cas-miR390b

• Accession: MIMAT0045336
• Description: Camelina sativa cas-miR390b mature miRNA
• Sequence: 8 - AAGCUCAGGAGGGAUAGCGCC - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542