Stem-loop cas-MIR159a

Accession

MI0037179

Description

Camelina sativa cas-MIR159a precursor miRNA

Literature search

1 open access papers mention cas-MIR159a
(2 sentences)

Sequence

aaaaggagcucccuucguccaaaacgaagaggacaagauuuaaggaacuaaaaagcagaaucuaaguguucauggauuccucaaagagugcaaauugaagguuaacaacagccugaagaaagcguccuuuaagaggauugcaugagcucuuagauuucucucguuuuucucuacauauauuuccuucucuucucuucgUUUGGAUUGAAGGGAGCUCCUuuu
(((((((((((((((((((((((.(((((((((..(((....(((((.((((((((((((((((((.(((((((.(.(((((((((.((((.......(((((......))))).......))).)))))..))))).).))))))).)))))))...))).)))))).........)).)))))))).))))))))))))))).)))))))))))))))))

Structure

                 -      a         ca   uuua     c  ---------      -   ---       u       g u     --    a -   aaauuga     aa 
aaaaggagcucccuucg uccaaa cgaagagga  aga    aggaa ua         aaaagc aga   aucuaag guucaug a uccuc  aaag g ugc       agguu  c
||||||||||||||||| |||||| |||||||||  |||    ||||| ||         |||||| |||   ||||||| ||||||| | |||||  |||| | |||       |||||   
uuuUCCUCGAGGGAAGU AGGUUU gcuucucuu  ucu    uccuu au         uuuuug ucu   uagauuc cgaguac u aggag  uuuc c gcg       uccga  a
                 U      -         -c   ----     u  auacaucuc      c   cuu       u       g u     aa    - u   aaagaag     ca 

Annotation confidence Not enough data

Genome context

chr6: 25477238-25477459 [+]

Mature cas-miR159a

• Accession: MIMAT0045289
• Description: Camelina sativa cas-miR159a mature miRNA
• Sequence: 199 - UUUGGAUUGAAGGGAGCUCCU - 219
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542