Stem-loop cas-MIR156d

Accession

MI0037165

Description

Camelina sativa cas-MIR156d precursor miRNA

Literature search

1 open access papers mention cas-MIR156d
(4 sentences)

Sequence

agaaguUGACAGAAGAGAGUGAGCACacaaaggggaaguuguauaaacuuuuuguauaugguuugcuuuugcguGCUCACUCUCUUUCUGUCAUAacuucu
((((((((((((((((((((((((((.((((((.(((.(((((((((...)))))))).).))).)))))).)))))))))))).))))))))..))))))

Structure

      --        -            a      g   g -        c 
agaagu  UGACAGAA GAGAGUGAGCAC caaagg gaa u uguauaaa  
||||||  |||||||| |||||||||||| |||||| ||| | |||||||| u
ucuuca  ACUGUCUU CUCUCACUCGug guuuuc uuu g auauguuu  
      AU        U            c      g   g u        u 

Annotation confidence Not enough data

Genome context

chr13: 4416556-4416656 [-]

Mature cas-miR156d-5p

• Accession: MIMAT0045270
• Description: Camelina sativa cas-miR156d-5p mature miRNA
• Sequence: 7 - UGACAGAAGAGAGUGAGCAC - 26
• Evidence: experimental ; Illumina [1]

Mature cas-miR156d-3p

• Accession: MIMAT0045271
• Description: Camelina sativa cas-miR156d-3p mature miRNA
• Sequence: 75 - GCUCACUCUCUUUCUGUCAUA - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542