Stem-loop cas-MIR171b

Accession

MI0037206

Description

Camelina sativa cas-MIR171b precursor miRNA

Sequence

gcgagauauuagugcgguucaaucaaauagucguccucuuuaacuuauggagaucgguguuguucgaUUGAGCCGUGCCAAUAUCACGc
(((.((((((.(((((((((((((.((((((((..((((.........))))..)))..))))).))))))))))))).)))))).)))

Structure

   a      a             a     --   uc    uua 
gcg gauauu gugcgguucaauc aauag  ucg  cucu   a
||| |||||| ||||||||||||| |||||  |||  ||||   c
cGC CUAUAA CGUGCCGAGUUag uuguu  ggc  gagg   u
   A      C             c     gu   ua    uau 

Annotation confidence Not enough data

Genome context

chr3: 5196194-5196282 [-]

Mature cas-miR171b

• Accession: MIMAT0045322
• Description: Camelina sativa cas-miR171b mature miRNA
• Sequence: 68 - UUGAGCCGUGCCAAUAUCACG - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542