Stem-loop cas-MIR156e

Accession

MI0037166

Description

Camelina sativa cas-MIR156e precursor miRNA

Literature search

1 open access papers mention cas-MIR156e
(4 sentences)

Sequence

ggUGACAGAAGAGAGUGAGCACacauggugguuucuugcaugcuuuuuguaaucaggguuucaugcuugaagcuauguguGCUUACUCUCUCUCUGUCACC
(((((((((((((((((((((((((((((...(((..(((((..(((((....)))))...)))))..))))))))))))))))))))))).)))))))))

Structure

         -                    ggu   uu     -cu     u 
ggUGACAGA AGAGAGUGAGCACacauggu   uuc  gcaug   uuuug a
||||||||| ||||||||||||||||||||   |||  |||||   |||||  
CCACUGUCU UCUCUCAUUCGuguguaucg   aag  cguac   gggac a
         C                    ---   uu     uuu     u 

Annotation confidence Not enough data

Genome context

chr8: 1152639-1152739 [+]

Mature cas-miR156e-5p

• Accession: MIMAT0045272
• Description: Camelina sativa cas-miR156e-5p mature miRNA
• Sequence: 3 - UGACAGAAGAGAGUGAGCAC - 22
• Evidence: experimental ; Illumina [1]

Mature cas-miR156e-3p

• Accession: MIMAT0045273
• Description: Camelina sativa cas-miR156e-3p mature miRNA
• Sequence: 81 - GCUUACUCUCUCUCUGUCACC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542