Stem-loop cas-MIR166a

Accession

MI0037187

Description

Camelina sativa cas-MIR166a precursor miRNA

Literature search

1 open access papers mention cas-MIR166a
(5 sentences)

Sequence

guugagaGGAAUGUUGUCUGGCUCGAGGucaugaaggaaaggaucauuccauuuaaauuugaaagaacgaacaaagaauacacuacaugauucucggaccaggcuucauucccccuaac
((((.(.((((((..((((((.(((((((((((.(((((.(((....))).)))...((((......))))...........)).))))).)))))).))))))..)))))).).))))

Structure

    a a      UU      C      -     a  ----------------------------   a   u 
guug g GGAAUG  GUCUGG UCGAGG ucaug ag                            gaa gga c
|||| | ||||||  |||||| |||||| ||||| ||                            ||| |||  
caau c ccuuac  cggacc ggcucu aguac uc                            uuu ccu a
    c c      uu      a      u     a  acauaagaaacaagcaagaaaguuuaaa   a   u 

Annotation confidence Not enough data

Genome context

chr20: 3722877-3722995 [+]

Mature cas-miR166a

• Accession: MIMAT0045298
• Description: Camelina sativa cas-miR166a mature miRNA
• Sequence: 8 - GGAAUGUUGUCUGGCUCGAGG - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542