Stem-loop cas-MIR857

Accession

MI0037239

Description

Camelina sativa cas-MIR857 precursor miRNA

Literature search

1 open access papers mention cas-MIR857
(1 sentences)

Sequence

uacaacAAACUUUCACCAUACAAAAUAAuaaauaaaaaacacccaagaaaaaguuugaauguacaaagguuagucuuauuaacguaauugugaucauuuuuguuaaaaauagugacgucguuuuuuuauuuuuuuuuaaaaauaggaaaugucacuauuuuaaauggaaaucgaacaugucuauugacgaaauuaacguugagcauuugaacuuuuaauugaguauguuauuuuguauguugaagguguauugua
(((((...(((((((.((((((((((((((..........((.(((..((((((((((((((.(((..((((((...............(((.(((((((((((.(((((((((((((....(((((((((((....)))))))))))))))))))))))).))))))))).)).)))(((....)))...)))))).))).))))))))))))))..))).)).)))))))))))))).)))))))...)))))

Structure

     cAA       C              aauaaaaaac  c   ga              a   ag      cuuauuaacguaauu   a  -         a             cguu           u 
uacaa   ACUUUCA CAUACAAAAUAAua          ac caa  aaaaguuugaaugu caa  guuagu               gug uc auuuuuguu aaaauagugacgu    uuuuuauuuuu u
|||||   ||||||| ||||||||||||||          || |||  |||||||||||||| |||  ||||||               ||| || ||||||||| |||||||||||||    |||||||||||  
auguu   uggaagu guauguuuuauugu          ug guu  uuuucaaguuuacg guu  caauua               uac ag uaaagguaa uuuuaucacugua    aaggauaaaaa u
     aug       u              ---------a  a   aa              a   -g      --aagcaguuaucug   a  c         a             ----           u 

Annotation confidence Not enough data

Genome context

chr12: 20770573-20770827 [+]

Mature cas-miR857

• Accession: MIMAT0045362
• Description: Camelina sativa cas-miR857 mature miRNA
• Sequence: 7 - AAACUUUCACCAUACAAAAUAA - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542