Stem-loop cas-MIR171a

Accession

MI0037205

Description

Camelina sativa cas-MIR171a precursor miRNA

Sequence

ugaUAUUGGCCUGGUUCACUCAGAucuucgugaacaccacgcacguacauucuauagauuaucUGAUUGAGCCGCGCCAAUAUCU
.(((((((((.(((((((.((((((..((..(((....((....))...)))....))..)))))).))))))).))))))))).

Structure

u         C       C      cu  --gu   cacc  g 
 gaUAUUGGC UGGUUCA UCAGAu  uc    gaa    ac c
 ||||||||| ||||||| ||||||  ||    |||    ||  
 CUAUAACCG GCCGAGU AGUcua  ag    cuu    ug a
U         C       U      uu  auau   -aca  c 

Annotation confidence Not enough data

Genome context

chr4: 17926959-17927043 [+]

Mature cas-miR171a-5p

• Accession: MIMAT0045320
• Description: Camelina sativa cas-miR171a-5p mature miRNA
• Sequence: 4 - UAUUGGCCUGGUUCACUCAGA - 24
• Evidence: experimental ; Illumina [1]

Mature cas-miR171a-3p

• Accession: MIMAT0045321
• Description: Camelina sativa cas-miR171a-3p mature miRNA
• Sequence: 64 - UGAUUGAGCCGCGCCAAUAUCU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542