Stem-loop cas-MIR396a

Accession

MI0037224

Description

Camelina sativa cas-MIR396a precursor miRNA

Literature search

1 open access papers mention cas-MIR396a
(2 sentences)

Sequence

cuguauucUUCCACAGCUUUCUUGAACUGcaaaauuucuucagauuuguuuuauaucuauugcgcguauaaaaaauagugauuuuuuuuuucacaucuccuggaucaauugauuugcgguucaauaaagcugugggaagauacag
(((((((.((((((((((((.(((((((((((((((..(((((.....((((((((.........))))))))....((((.........)))).....)))))..)))...)))))))))))).)))))))))))).)))))))

Structure

       c            C            ---   uc     ---------------------auuug        cua 
cuguauu UUCCACAGCUUU UUGAACUGcaaa   auu  uucag                          uuuuauau   u
||||||| |||||||||||| ||||||||||||   |||  |||||                          ||||||||   u
gacauag agggugucgaaa aacuuggcguuu   uaa  agguc                          aaaauaug   g
       a            u            agu   cu     cucuacacuuuuuuuuuuagugauaa        cgc 

Annotation confidence Not enough data

Genome context

chr15: 20238925-20239069 [+]

Mature cas-miR396a

• Accession: MIMAT0045346
• Description: Camelina sativa cas-miR396a mature miRNA
• Sequence: 9 - UUCCACAGCUUUCUUGAACUG - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542