Stem-loop cas-MIR403

Accession

MI0037232

Description

Camelina sativa cas-MIR403 precursor miRNA

Literature search

1 open access papers mention cas-MIR403
(1 sentences)

Sequence

auuacauguuuugugcgugaaccuaauucgaaaggcuuuauuauggacgagauuuuguguguguuuucuagcuguuggaUUAGAUUCACGCACAAACUCGUaau
(((((..((((.(((((((((.(((((((((..((((....((((.((((....)))).))))......)))).))))))))).)))))))))))))..)))))

Structure

     au    u         c         aa    --uuau    g    g 
auuac  guuu gugcgugaa cuaauucga  ggcu      uaug acga a
|||||  |||| ||||||||| |||||||||  ||||      |||| ||||  
uaaUG  CAAA CACGCACUU GAUUagguu  ucga      gugu uguu u
     CU    -         A         -g    ucuuuu    g    u 

Annotation confidence Not enough data

Genome context

chr4: 29774480-29774583 [+]

Mature cas-miR403

• Accession: MIMAT0045355
• Description: Camelina sativa cas-miR403 mature miRNA
• Sequence: 80 - UUAGAUUCACGCACAAACUCGU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542