Stem-loop cas-MIR166f

Accession

MI0037192

Description

Camelina sativa cas-MIR166f precursor miRNA

Literature search

1 open access papers mention cas-MIR166f
(4 sentences)

Sequence

agaGGAAUGUUGUUUGGCUCGAGGucauggagagucauucuuuaacgaaacaccaaaacucuaaaugauucUCGGACCAGGCUUCAUUCCCCU
((.((((((..((((((.((((((((((..(((((......................)))))..)))).)))))).))))))..)))))).))

Structure

  a      UU      C      -    gg     cauucuuuaa 
ag GGAAUG  GUUUGG UCGAGG ucau  agagu          c
|| ||||||  |||||| |||||| ||||  |||||           
UC CCUUAC  CGGACC GGCUcu agua  ucuca          g
  C      UU      A      u    aa     aaaccacaaa 

Annotation confidence Not enough data

Genome context

chr2: 27086939-27087031 [+]

Mature cas-miR166f-5p

• Accession: MIMAT0045304
• Description: Camelina sativa cas-miR166f-5p mature miRNA
• Sequence: 4 - GGAAUGUUGUUUGGCUCGAGG - 24
• Evidence: experimental ; Illumina [1]

Mature cas-miR166f-3p

• Accession: MIMAT0045305
• Description: Camelina sativa cas-miR166f-3p mature miRNA
• Sequence: 72 - UCGGACCAGGCUUCAUUCCCCU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542