Stem-loop cas-MIR8171

Accession

MI0037246

Description

Camelina sativa cas-MIR8171 precursor miRNA

Sequence

ccacuuAUAGGUGGGCCAGUGGUAGGAugaauuucggguugagggugagauucccacuacuuccggguucgaauccccacggcugcaaacaccuuaagugg
(((((((.(((((((((.((((..(((((((((.((((...((((.((...)))).))...)))))))))..)))))))))))).....))))))))))))

Structure

       U     -----    A    UA    --     u    uug  -  u  g 
ccacuuA AGGUG     GGCC GUGG  GGAu  gaauu cggg   ag gg ga  
||||||| |||||     |||| ||||  ||||  ||||| ||||   || || || a
ggugaau uccac     ucgg cacc  ccua  cuugg gccu   uc cc cu  
       -     aaacg    -    --    ag     -    uca  a  -  u 

Annotation confidence Not enough data

Genome context

chr2: 13447418-13447518 [+]

Mature cas-miR8171

• Accession: MIMAT0045369
• Description: Camelina sativa cas-miR8171 mature miRNA
• Sequence: 7 - AUAGGUGGGCCAGUGGUAGGA - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542