Stem-loop cas-MIR156f

Accession

MI0037167

Description

Camelina sativa cas-MIR156f precursor miRNA

Literature search

1 open access papers mention cas-MIR156f
(4 sentences)

Sequence

gauggUGACAGAAGAGAGUGAGCACaaauggugacuuucuugcauaagguuucaugcugggagcuauguguGCUCACUCUCUAUCCGUCACCuc
...((((((.((((((((((((((((.(((((....((((.((((........)))).))))))))).)))))))))))))).)).))))))..

Structure

gau      A  -              a     gacu    u    aag 
   ggUGAC GA AGAGAGUGAGCACa auggu    uucu gcau   g
   |||||| || |||||||||||||| |||||    |||| ||||    
   CCACUG CU UCUCUCACUCGugu uaucg    aggg cgua   u
-cu      C  A              g     ----    u    cuu 

Annotation confidence Low

Genome context

chr8: 11005879-11005972 [+]

Mature cas-miR156f-5p

• Accession: MIMAT0045274
• Description: Camelina sativa cas-miR156f-5p mature miRNA
• Sequence: 6 - UGACAGAAGAGAGUGAGCAC - 25
• Evidence: experimental ; Illumina [1]

Mature cas-miR156f-3p

• Accession: MIMAT0045275
• Description: Camelina sativa cas-miR156f-3p mature miRNA
• Sequence: 72 - GCUCACUCUCUAUCCGUCACC - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25826400
   Identification of microRNAs and transcript targets in Camelina sativa by deep sequencing and computational methods
   Poudel S, Aryal N, Lu C
   PLoS One (2015) 10:e0121542